CUDA-MEME: Accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units.
Yongchao LiuBertil SchmidtWeiguo LiuDouglas L. MaskellPublished in: Pattern Recognit. Lett. (2010)
Keyphrases
- graphics processing units
- biological sequences
- motif discovery
- compute unified device architecture
- general purpose
- parallel implementation
- parallel computing
- motif finding
- sequence data
- protein sequences
- molecular biology
- dna sequences
- biological data
- computing systems
- real time
- binding sites
- computational biology
- parallel processing
- massively parallel
- floating point
- high performance computing
- high throughput
- self organizing maps
- knowledge discovery
- data analysis
- statistically significant
- sequence databases
- association rule mining
- machine learning