An FPGA Accelerator of the Wavefront Algorithm for Genomics Pairwise Alignment.
Abbas HaghiSantiago Marco-SolaLluc AlvarezDionysios DiamantopoulosChristoph HagleitnerMiquel MoretóPublished in: FPL (2021)
Keyphrases
- pairwise
- preprocessing
- k means
- learning algorithm
- times faster
- cost function
- detection algorithm
- objective function
- dynamic programming
- computational cost
- high accuracy
- probabilistic model
- experimental evaluation
- sequence alignment
- real time
- search space
- expectation maximization
- np hard
- optimization algorithm
- matching algorithm
- segmentation algorithm
- parallel implementation
- recognition algorithm
- similarity function
- feature selection
- similarity measure
- particle swarm optimization
- linear programming
- simulated annealing
- computational complexity
- significant improvement