On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices.
Pietro di LenaPiero FariselliLuciano MargaraMarco VassuraRita CasadioPublished in: WABI (2009)
Keyphrases
- prediction accuracy
- upper bound
- similarity matrices
- amino acids
- protein structure prediction
- similarity matrix
- lower bound
- contact map
- protein sequences
- kernel matrix
- protein structure
- solvent accessibility
- ensemble methods
- protein function
- amino acid sequences
- improve the prediction accuracy
- similarity values
- linear combination
- predictive power
- secondary structure
- web page prediction
- protein protein interactions
- similarity measure
- co occurrence
- sequence analysis
- highly correlated
- pairwise
- computational methods
- similarity function
- kernel methods
- feature space