WFA-FPGA: An efficient accelerator of the wavefront algorithm for short and long read genomics alignment.
Abbas HaghiSantiago Marco-SolaLluc AlvarezDionysios DiamantopoulosChristoph HagleitnerMiquel MoretóPublished in: Future Gener. Comput. Syst. (2023)
Keyphrases
- decision trees
- parallel implementation
- cost function
- detection algorithm
- high speed
- experimental evaluation
- computationally efficient
- computational complexity
- preprocessing
- search space
- significant improvement
- times faster
- learning algorithm
- high accuracy
- neural network
- tree structure
- simulated annealing
- convergence rate
- worst case
- data mining
- real time
- computational cost
- dynamic programming
- linear programming
- np hard
- segmentation algorithm
- optimization algorithm
- association rules
- recent advances
- optimal solution
- objective function
- hardware implementation
- computing systems