New Genome Similarity Measures based on Conserved Gene Adjacencies.
Daniel DoerrLuis Antonio Brasil KowadaEloi AraujoShachi DeshpandeSimone DantasBernard M. E. MoretJens StoyePublished in: J. Comput. Biol. (2017)
Keyphrases
- phylogenetic analysis
- comparative genomics
- similarity measure
- nucleotide sequences
- molecular biology
- sequence data
- sequence alignment
- dna sequences
- gene clusters
- sequenced genomes
- protein sequences
- binding sites
- genome scale
- escherichia coli
- sequence similarity
- coding regions
- protein coding regions
- pairwise
- genomic sequences
- evolutionary history
- semantic similarity
- human genome
- edit distance
- gene prediction
- gene expression analysis
- microarray data
- gene expression
- microarray
- feature vectors
- sequence analysis
- rna sequences
- gene ontology
- amino acids
- gene expression data