sBWT: memory efficient implementation of the hardware-acceleration-friendly Schindler transform for the fast biological sequence mapping.
Chia-Hua ChangMin-Te ChouYi-Chung WuTing-Wei HongYun-Lung LiChia-Hsiang YangJui-Hung HungPublished in: Bioinform. (2016)
Keyphrases
- efficient implementation
- biological sequences
- hardware implementation
- highly parallel
- sequence data
- molecular biology
- parallel architectures
- protein sequences
- computational biology
- low cost
- active set
- real time
- main memory
- biological data
- dna sequences
- hardware architecture
- direct memory access
- graphics processing units
- binding sites
- microarray data
- natural language processing
- data mining