Design and implementation of a CUDA-compatible GPU-based core for gapped BLAST algorithm.
Cheng LingKhaled BenkridPublished in: ICCS (2010)
Keyphrases
- parallel implementation
- times faster
- computational complexity
- np hard
- detection algorithm
- optimization algorithm
- preprocessing
- learning algorithm
- search space
- significant improvement
- dynamic programming
- experimental evaluation
- high accuracy
- optimal solution
- user interface
- k means
- computational cost
- objective function
- expectation maximization
- segmentation algorithm
- matching algorithm
- graphics processors
- recognition algorithm
- bayesian networks
- similarity measure