SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering.
Kellen Garrison CresswellJohn C. StansfieldMikhail G. DozmorovPublished in: BMC Bioinform. (2020)
Keyphrases
- spectral clustering
- clustering method
- pairwise
- data clustering
- image segmentation
- graph partitioning
- spectral methods
- clustering algorithm
- k means
- evolutionary clustering
- similarity matrix
- eigendecomposition
- negative matrix factorization
- normalized cut
- real world
- nonnegative matrix factorization
- graph laplacian
- alternative clusterings
- affinity matrix
- constrained spectral clustering
- constrained clustering
- label propagation
- semi supervised
- classical clustering algorithms
- computer vision