Joint base-calling of two DNA sequences with factor graphs.
Xiaomeng ShiDesmond S. LunMuriel MédardRalf KötterJames C. MeldrimAndrew J. BarryPublished in: IEEE Trans. Inf. Theory (2010)
Keyphrases
- dna sequences
- factor graphs
- message passing
- graphical models
- belief propagation
- latent variables
- tandem repeats
- human genome
- approximate inference
- dna computing
- probabilistic graphical models
- exact inference
- sequence patterns
- coding regions
- markov networks
- binding sites
- probabilistic inference
- model construction
- machine learning
- markov random field
- probabilistic model
- bayesian networks
- parameter learning
- generative model
- graph cuts
- similarity measure
- feature selection