Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural networks.
Qicheng MaGung-Wei ChirnRichard CaiJoseph D. SzustakowskiN. R. NirmalaPublished in: BMC Bioinform. (2005)
Keyphrases
- protein sequences
- sequence alignment
- multiple alignment
- similarity scores
- neural network
- biological sequences
- multiple sequence alignment
- sequence analysis
- similarity calculation
- computational biology
- secondary structure
- multiple sequence alignments
- sequence databases
- genetic algorithm
- protein structure prediction
- pairwise
- sequence data
- protein function
- distance metric
- protein families
- self organizing maps
- co occurrence
- protein secondary structure
- protein structural