Accelerating DNA pairwise sequence alignment using FPGA and a customized convolutional neural network.
Amr Ezz El-Din RashedMarwa ObayaHossam El-Din MoustafaPublished in: Comput. Electr. Eng. (2021)
Keyphrases
- sequence alignment
- convolutional neural network
- pairwise
- binding sites
- sequence databases
- face detection
- comparative genomics
- phylogenetic analysis
- smith waterman
- dna sequences
- multi class
- dna computing
- hardware implementation
- statistical significance
- field programmable gate array
- real time
- markov random field
- sequence data
- sequence analysis
- multiple alignment
- similarity measure
- gpu accelerated
- dynamic programming
- biological sequences
- neural network
- transcription factors
- gene expression
- protein sequences
- object detection
- multiple sequence alignment
- object recognition