Marker-controlled watershed with deep edge emphasis and optimized H-minima transform for automatic segmentation of densely cultivated 3D cell nuclei.
Tuomas KasevaBahareh OmidaliEero HippeläinenTeemu MäkeläUlla WilppuAlexey SofievArto MerivaaraMarjo YliperttulaSauli SavolainenEero SalliPublished in: BMC Bioinform. (2022)
Keyphrases
- automatic segmentation
- cell nuclei
- segmentation algorithm
- automated analysis
- low contrast
- quantitative analysis
- automated detection
- edge information
- cancer diagnosis
- quantitative evaluation
- edge detection
- region growing
- watershed segmentation
- nonrigid registration
- microscopy images
- graph cuts
- brain tissue
- segmentation result
- fully automatic
- image segmentation
- scale space
- input image
- ground truth
- video sequences