Improvements in viral gene annotation using large language models and soft alignments.
William L. HarriganBarbra D. FerrellK. Eric WommackShawn W. PolsonZachary D. SchreiberMahdi BelcaidPublished in: BMC Bioinform. (2024)
Keyphrases
- language model
- language modeling
- sequence alignment
- n gram
- gene function
- probabilistic model
- relevance model
- document retrieval
- language modelling
- speech recognition
- active learning
- test collection
- gene expression
- retrieval model
- query expansion
- language models for information retrieval
- statistical language models
- ad hoc information retrieval
- translation model
- microarray
- metadata
- information retrieval
- pseudo relevance feedback
- vector space model
- context sensitive
- biomedical literature
- term dependencies
- document length
- image annotation
- language model for information retrieval