CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models.
Vamsi NallapareddyNicola BordinIan SillitoeMichael HeinzingerMaria LittmannVaishali P. WamanNeeladri SenBurkhard RostChristine A. OrengoPublished in: Bioinform. (2023)
Keyphrases
- language model
- protein sequences
- language modeling
- n gram
- probabilistic model
- language modelling
- speech recognition
- statistical language models
- retrieval model
- test collection
- document retrieval
- information retrieval
- query expansion
- language model for information retrieval
- smoothing methods
- vector space model
- pseudo relevance feedback
- document ranking
- ad hoc information retrieval
- relevance model
- translation model
- vector space
- okapi bm
- context sensitive
- query terms
- relevant documents
- word error rate
- text mining
- language models for information retrieval
- image retrieval