An Alignment-Free Distance Measure for Closely Related Genomes.
Bernhard HauboldMirjana Domazet-LosoThomas WiehePublished in: RECOMB-CG (2008)
Keyphrases
- closely related
- distance measure
- dynamic time warping
- phylogenetic analysis
- similarity measure
- euclidean distance
- sequence alignment
- distance function
- np hard
- distance metric
- nearest neighbor classifier
- hausdorff distance
- vector space
- texture features
- edit distance
- kullback leibler
- sequence data
- hamming distance
- kernel function
- dynamic programming
- pairwise
- sequence analysis
- triangle inequality
- bhattacharyya distance
- objective function