New Genome Similarity Measures Based on Conserved Gene Adjacencies.
Luis Antonio Brasil KowadaDaniel DoerrSimone DantasJens StoyePublished in: RECOMB (2016)
Keyphrases
- comparative genomics
- phylogenetic analysis
- similarity measure
- nucleotide sequences
- sequence alignment
- molecular biology
- sequence data
- dna sequences
- gene clusters
- genome scale
- pairwise
- protein sequences
- evolutionary history
- distance measure
- escherichia coli
- regulatory networks
- semantic similarity
- sequenced genomes
- feature vectors
- binding sites
- genomic sequences
- gene expression
- edit distance
- gene ontology
- microarray
- genome rearrangements