The SMEM Seeding Acceleration for DNA Sequence Alignment.
Mau-Chung Frank ChangYu-Ting ChenJason CongPo-Tsang HuangChun-Liang KuoCody Hao YuPublished in: FCCM (2016)
Keyphrases
- sequence alignment
- binding sites
- sequence databases
- dna sequences
- comparative genomics
- pairwise
- gene expression
- phylogenetic analysis
- dna computing
- protein sequences
- sequence data
- biological sequences
- gpu accelerated
- dynamic programming
- multiple sequence alignment
- smith waterman
- transcription factors
- multiple alignment
- sequence analysis
- amino acids
- data sets
- statistical significance
- microarray