ASAP: Accelerated Short-Read Alignment on Programmable Hardware.
Subho S. BanerjeeMohamed El-HadedyJong Bin LimZbigniew T. KalbarczykDeming ChenSteven S. LumettaRavishankar K. IyerPublished in: CoRR (2018)
Keyphrases
- low cost
- single chip
- hardware and software
- digital signal processors
- real time
- signal processor
- image alignment
- computing power
- reference genome
- software implementation
- digital circuits
- sequence alignment
- dynamic time warping
- computing systems
- ontology matching
- hardware architecture
- hardware implementation
- programmable logic
- general purpose
- massively parallel
- field programmable gate array
- personal computer
- word alignment
- digital signal processor
- general purpose processors
- computer systems
- image processing