Prediction of RNA-interacting residues in a protein using CNN and evolutionary profile.
Sumeet PatiyalAnjali DhallKhushboo BajajHarshita SahuGajendra P. S. RaghavaPublished in: Briefings Bioinform. (2023)
Keyphrases
- multiple sequence alignments
- contact map
- protein structure prediction
- secondary structure
- protein sequences
- amino acids
- protein structure
- amino acid sequences
- protein tertiary structure
- contact maps
- protein chains
- protein secondary structure
- tertiary structure
- predicting protein
- multiple alignment
- experimentally determined
- multiple sequence alignment
- protein function
- protein folding
- rna secondary structure prediction
- nucleotide sequences
- solvent accessibility
- drug design
- psi blast
- protein structure alignment
- structural motifs
- phylogenetic trees
- prediction accuracy
- subcellular localization
- protein protein
- sequence analysis
- genetic algorithm
- protein protein interactions
- computational biology
- protein interaction
- remote homology detection
- protein classification
- rna sequences
- genome sequences
- molecular biology
- physicochemical properties
- physico chemical
- disordered regions
- molecular dynamics simulations
- genome scale
- rna secondary structures
- cellular neural networks
- genome wide
- structural features
- protein structural
- protein interaction data
- coarse grained