Gajendra P. S. Raghava

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 36

Top Topics

Experimentally Validated

Prostate Cancer

Top Venues

Briefings Bioinform.

Comput. Biol. Medicine

Database J. Biol. Databases Curation

Nucleic Acids Res.

Publications

Nishant Kumar, Sadhana Tripathi, Neelam Sharma, Sumeet Patiyal, Naorem Leimarembi Devi, Gajendra P. S. Raghava
A method for predicting linear and conformational B-cell epitopes in an antigen from its primary sequence. Comput. Biol. Medicine 170 (2024)
Shubham Choudhury, Nisha Bajiya, Sumeet Patiyal, Gajendra P. S. Raghava
MRSLpred - a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale. Frontiers Bioinform. 4 (2024)
Anand Singh Rathore, Shubham Choudhury, Akanksha Arora, Purva Tijare, Gajendra P. S. Raghava
ToxinPred 3.0: An improved method for predicting the toxicity of peptides. Comput. Biol. Medicine 179 (2024)
Naorem Leimarembi Devi, Neelam Sharma, Gajendra P. S. Raghava
A web server for predicting and scanning of IL-5 inducing peptides using alignment-free and alignment-based method. Comput. Biol. Medicine 158 (2023)
Nishant Kumar, Sumeet Patiyal, Shubham Choudhury, Ritu Tomer, Anjali Dhall, Gajendra P. S. Raghava
DMPPred: a tool for identification of antigenic regions responsible for inducing type 1 diabetes mellitus. Briefings Bioinform. 24 (1) (2023)
Anjali Dhall, Sumeet Patiyal, Harpreet Kaur, Gajendra P. S. Raghava
Risk assessment of cancer patients based on HLA-I alleles, neobinders and expression of cytokines. Comput. Biol. Medicine 167 (2023)
Akshara Pande, Sumeet Patiyal, Anjali Lathwal, Chakit Arora, Dilraj Kaur, Anjali Dhall, Gaurav Mishra, Harpreet Kaur, Neelam Sharma, Shipra Jain, Salman Sadullah Usmani, Piyush Agrawal, Rajesh Kumar, Vinod Kumar, Gajendra P. S. Raghava
Pfeature: A Tool for Computing Wide Range of Protein Features and Building Prediction Models. J. Comput. Biol. 30 (2) (2023)
Sumeet Patiyal, Anjali Dhall, Khushboo Bajaj, Harshita Sahu, Gajendra P. S. Raghava
Prediction of RNA-interacting residues in a protein using CNN and evolutionary profile. Briefings Bioinform. 24 (1) (2023)
Akanksha Arora, Dashleen Kaur, Sumeet Patiyal, Dilraj Kaur, Ritu Tomer, Gajendra P. S. Raghava
SalivaDB - a comprehensive database for salivary biomarkers in humans. Database J. Biol. Databases Curation 2023 (2023)
Nisha Bajiya, Anjali Dhall, Suchet Aggarwal, Gajendra P. S. Raghava
Advances in the field of phage-based therapy with special emphasis on computational resources. Briefings Bioinform. 24 (1) (2023)
Anjali Dhall, Sumeet Patiyal, Shubham Choudhury, Shipra Jain, Kashish Narang, Gajendra P. S. Raghava
TNFepitope: A webserver for the prediction of TNF-α inducing epitopes. Comput. Biol. Medicine 160 (2023)
Anjali Dhall, Sumeet Patiyal, Gajendra P. S. Raghava
HLAncPred: a method for predicting promiscuous non-classical HLA binding sites. Briefings Bioinform. 23 (5) (2022)
Neelam Sharma, Naorem Leimarembi Devi, Shipra Jain, Gajendra P. S. Raghava
ToxinPred2: an improved method for predicting toxicity of proteins. Briefings Bioinform. 23 (5) (2022)
Sumeet Patiyal, Anjali Dhall, Gajendra P. S. Raghava
A deep learning-based method for the prediction of DNA interacting residues in a protein. Briefings Bioinform. 23 (5) (2022)
Satakshi Gupta, Neelam Sharma, Naorem Leimarembi Devi, Shipra Jain, Gajendra P. S. Raghava
Collection, compilation and analysis of bacterial vaccines. Comput. Biol. Medicine 149 (2022)
Shipra Jain, Anjali Dhall, Sumeet Patiyal, Gajendra P. S. Raghava
IL13Pred: A method for predicting immunoregulatory cytokine IL-13 inducing peptides. Comput. Biol. Medicine 143 (2022)
Neelam Sharma, Naorem Leimarembi Devi, Satakshi Gupta, Gajendra P. S. Raghava
Computational resources in healthcare. WIREs Data Mining Knowl. Discov. 12 (3) (2022)
Neelam Sharma, Sumeet Patiyal, Anjali Dhall, Akshara Pande, Chakit Arora, Gajendra P. S. Raghava
AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes. Briefings Bioinform. 22 (4) (2021)
Dikscha Sapra, Harpreet Kaur, Anjali Dhall, Gajendra P. S. Raghava
ProCanBio: A Database of Manually Curated Biomarkers for Prostate Cancer. J. Comput. Biol. 28 (12) (2021)
Anjali Lathwal, Rajesh Kumar, Gajendra P. S. Raghava
In-silico identification of subunit vaccine candidates against lung cancer-associated oncogenic viruses. Comput. Biol. Medicine 130 (2021)
Neelam Sharma, Sumeet Patiyal, Anjali Dhall, Naorem Leimarembi Devi, Gajendra P. S. Raghava
ChAlPred: A web server for prediction of allergenicity of chemical compounds. Comput. Biol. Medicine 136 (2021)
Anjali Dhall, Sumeet Patiyal, Neelam Sharma, Salman Sadullah Usmani, Gajendra P. S. Raghava
Computer-aided prediction and design of IL-6 inducing peptides: IL-6 plays a crucial role in COVID-19. Briefings Bioinform. 22 (2) (2021)
Deepika Mathur, Harpreet Kaur, Anjali Dhall, Neelam Sharma, Gajendra P. S. Raghava
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly. Comput. Biol. Medicine 133 (2021)
Piyush Agrawal, Dhruv Bhagat, Manish Mahalwal, Neelam Sharma, Gajendra P. S. Raghava
AntiCP 2.0: an updated model for predicting anticancer peptides. Briefings Bioinform. 22 (3) (2021)
Vivek Dhar Dwivedi, Aditya Arya, Pardeep Yadav, Rajesh Kumar, Vinod Kumar, Gajendra P. S. Raghava
DenvInD: dengue virus inhibitors database for clinical and molecular research. Briefings Bioinform. 22 (3) (2021)
Anjali Dhall, Sumeet Patiyal, Neelam Sharma, Naorem Leimarembi Devi, Gajendra P. S. Raghava
Computer-aided prediction of inhibitors against STAT3 for managing COVID-19 associated cytokine storm. Comput. Biol. Medicine 137 (2021)
Harpreet Kaur, Sherry Bhalla, Dilraj Kaur, Gajendra P. S. Raghava
CancerLivER: a database of liver cancer gene expression resources and biomarkers. Database J. Biol. Databases Curation 2020 (2020)
Sana Akhter, Harpreet Kaur, Piyush Agrawal, Gajendra P. S. Raghava
RareLSD: a manually curated database of lysosomal enzymes associated with rare diseases. Database J. Biol. Databases Curation 2019 (2019)
Salman Sadullah Usmani, Piyush Agrawal, Manika Sehgal, Pradeep Kumar Patel, Gajendra P. S. Raghava
ImmunoSPdb: an archive of immunosuppressive peptides. Database J. Biol. Databases Curation 2019 (2019)
Dilraj Kaur, Sumeet Patiyal, Neelam Sharma, Salman Sadullah Usmani, Gajendra P. S. Raghava
PRRDB 2.0: a comprehensive database of pattern-recognition receptors and their ligands. Database J. Biol. Databases Curation 2019 (2019)
Piyush Agrawal, Harinder Singh, Hemant Kumar Srivastava, Sandeep Singh, Gaurav Kishore, Gajendra P. S. Raghava
Benchmarking of different molecular docking methods for protein-peptide docking. BMC Bioinform. (13) (2019)
Piyush Agrawal, Sumeet Patiyal, Rajesh Kumar, Vinod Kumar, Harinder Singh, Pawan Kumar Raghav, Gajendra P. S. Raghava
ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank. Database J. Biol. Databases Curation 2019 (2019)
Salman Sadullah Usmani, Rajesh Kumar, Vinod Kumar, Sandeep Singh, Gajendra P. S. Raghava
AntiTbPdb: a knowledgebase of anti-tubercular peptides. Database J. Biol. Databases Curation 2018 (2018)
Sandeep Kumar Dhanda, Salman Sadullah Usmani, Piyush Agrawal, Gandharva Nagpal, Ankur Gautam, Gajendra P. S. Raghava
Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics. Briefings Bioinform. 18 (3) (2017)
Piyush Agrawal, Sherry Bhalla, Salman Sadullah Usmani, Sandeep Singh, Kumardeep Chaudhary, Gajendra P. S. Raghava, Ankur Gautam
CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides. Nucleic Acids Res. 44 (Database-Issue) (2016)
Sandeep Singh, Kumardeep Chaudhary, Sandeep Kumar Dhanda, Sherry Bhalla, Salman Sadullah Usmani, Ankur Gautam, Abhishek Tuknait, Piyush Agrawal, Deepika Mathur, Gajendra P. S. Raghava
SATPdb: a database of structurally annotated therapeutic peptides. Nucleic Acids Res. 44 (Database-Issue) (2016)
Atul Tyagi, Abhishek Tuknait, Priya Anand, Sudheer Gupta, Minakshi Sharma, Deepika Mathur, Anshika Joshi, Sandeep Singh, Ankur Gautam, Gajendra P. S. Raghava
CancerPPD: a database of anticancer peptides and proteins. Nucleic Acids Res. 43 (Database-Issue) (2015)
Ravi Kumar, Kumardeep Chaudhary, Minakshi Sharma, Gandharva Nagpal, Jagat Singh Chauhan, Sandeep Singh, Ankur Gautam, Gajendra P. S. Raghava
AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic Acids Res. 43 (Database-Issue) (2015)
Bharat Panwar, Gajendra P. S. Raghava
Prediction of uridine modifications in tRNA sequences. BMC Bioinform. 15 (2014)
Divya Mehta, Priya Anand, Vineet Kumar, Anshika Joshi, Deepika Mathur, Sandeep Singh, Abhishek Tuknait, Kumardeep Chaudhary, Shailendra K. Gautam, Ankur Gautam, Grish C. Varshney, Gajendra P. S. Raghava
ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. Database J. Biol. Databases Curation 2014 (2014)
Ankur Gautam, Kumardeep Chaudhary, Sandeep Singh, Anshika Joshi, Priya Anand, Abhishek Tuknait, Deepika Mathur, Grish C. Varshney, Gajendra P. S. Raghava
Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides. Nucleic Acids Res. 42 (Database-Issue) (2014)
Manu Mangal, Parul Sagar, Harinder Singh, Gajendra P. S. Raghava, Subhash M. Agarwal
NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database. Nucleic Acids Res. 41 (Database-Issue) (2013)
Bharat Panwar, Sudheer Gupta, Gajendra P. S. Raghava
Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information. BMC Bioinform. 14 (2013)
Firoz Ahmed, Rakesh Kaundal, Gajendra P. S. Raghava
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinform. 14 (S-14) (2013)
Harinder Singh, Jagat Singh Chauhan, M. Michael Gromiha, Gajendra P. S. Raghava
ccPDB: compilation and creation of data sets from Protein Data Bank. Nucleic Acids Res. 40 (Database-Issue) (2012)
Aadil H. Bhat, Homchoru Mondal, Jagat Singh Chauhan, Gajendra P. S. Raghava, Amrish Methi, Alka Rao
ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins. Nucleic Acids Res. 40 (Database-Issue) (2012)
Nitish K. Mishra, Gajendra P. S. Raghava
Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information. BMC Bioinform. 11 (S-1) (2010)
Hifzur Rahman Ansari, Gajendra P. S. Raghava
Identification of NAD interacting residues in proteins. BMC Bioinform. 11 (2010)
Sneh Lata, Nitish K. Mishra, Gajendra P. S. Raghava
AntiBP2: improved version of antibacterial peptide prediction. BMC Bioinform. 11 (S-1) (2010)
Aarti Garg, Rupinder Tewari, Gajendra P. S. Raghava
. BMC Bioinform. 11 (S-1) (2010)
Jagat Singh Chauhan, Nitish K. Mishra, Gajendra P. S. Raghava
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information. BMC Bioinform. 11 (2010)
Aarti Garg, Rupinder Tewari, Gajendra P. S. Raghava
DoQ: using docking based energy scores to develop ligand based model for predicting antibacterials. BMC Bioinform. 11 (2010)
Firoz Ahmed, Hifzur Rahman Ansari, Gajendra P. S. Raghava
Prediction of guide strand of microRNAs from its sequence and secondary structure. BMC Bioinform. 10 (2009)
Jagat Singh Chauhan, Nitish K. Mishra, Gajendra P. S. Raghava
Identification of ATP binding residues of a protein from its primary sequence. BMC Bioinform. 10 (2009)
Manish Kumar, Gajendra P. S. Raghava
Prediction of nuclear proteins using SVM and HMM models. BMC Bioinform. 10 (2009)
Firoz Ahmed, Manish Kumar, Gajendra P. S. Raghava
Prediction of Polyadenylation Signals in Human DNA Sequences using Nucleotide Frequencies. Silico Biol. 9 (3) (2009)
Aarti Garg, Gajendra P. S. Raghava
ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins. BMC Bioinform. 9 (2008)
Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish C. Varshney, Gajendra P. S. Raghava
Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles. BMC Bioinform. 9 (2008)
Aarti Garg, Gajendra P. S. Raghava
A Machine Learning Based Method for the Prediction of Secretory Proteins Using Amino Acid Composition, Their Order and Similarity-Search. Silico Biol. 8 (2) (2008)
Manish Kumar, Varun Thakur, Gajendra P. S. Raghava
COPid: Composition Based Protein Identification. Silico Biol. 8 (2) (2008)
Sudipto Saha, Gajendra P. S. Raghava
Prediction of Neurotoxins Based on Their Function and Source. Silico Biol. 7 (4-5) (2007)
Manish Kumar, M. Michael Gromiha, Gajendra P. S. Raghava
Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinform. 8 (2007)
Mamoon Rashid, Sudipto Saha, Gajendra P. S. Raghava
Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs. BMC Bioinform. 8 (2007)
Sudipto Saha, Gajendra P. S. Raghava
BTXpred: Prediction of Bacterial Toxins. Silico Biol. 7 (4-5) (2007)
Harpreet Kaur, Gajendra P. S. Raghava
-H·π Interactions in Proteins Using Recurrent Neural Network. Silico Biol. 6 (1-2) (2006)
Rakesh Kaundal, Amar S. Kapoor, Gajendra P. S. Raghava
Machine learning techniques in disease forecasting: a case study on rice blast prediction. BMC Bioinform. 7 (2006)
Gajendra P. S. Raghava, Joon H. Han
Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein. BMC Bioinform. 6 (2005)