Accelerating Weeder: A DNA Motif Search Tool Using the Micron Automata Processor and FPGA.
Qiong WangMohamed El-HadedyKevin SkadronKe WangPublished in: IEICE Trans. Inf. Syst. (2017)
Keyphrases
- search tools
- dna sequences
- single chip
- high speed
- binding sites
- motif discovery
- biological sequences
- sequence databases
- digital signal
- gate array
- parallel architecture
- systolic array
- xilinx virtex
- fpga device
- content analysis
- hardware implementation
- sequence analysis
- file system
- end users
- personal information
- field programmable gate array
- metadata
- low power
- transcription factors
- general purpose processors
- low cost
- parallel processing
- transcription factor binding sites
- sequence data
- hardware architecture
- keyword search
- regular expressions
- cis regulatory
- social networking
- database
- databases
- cmos technology
- electron beam
- image sequences
- gene expression