ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data.
Navin RustagiOliver A. HamptonJie LiLiu XiRichard A. GibbsSharon E. PlonMarek KimmelDavid A. WheelerPublished in: BMC Bioinform. (2016)
Keyphrases
- input data
- data sets
- database
- noisy data
- computational complexity
- cost function
- detection algorithm
- data sources
- search space
- information loss
- optimization algorithm
- incomplete data
- preprocessing
- data reduction
- optimal solution
- synthetic datasets
- data quality
- data points
- data collection
- similarity measure
- data mining
- single scan
- dimensional data
- original data
- data distribution
- missing data
- segmentation algorithm
- probability distribution
- computational cost
- np hard
- k means
- data analysis
- objective function
- training data
- learning algorithm