1, 000x Faster Than PLINK: Genome-Wide Epistasis Detection with Logistic Regression Using Combined FPGA and GPU Accelerators.
Lars WienbrandtJan Christian KässensMatthias HübenthalDavid EllinghausPublished in: ICCS (2) (2018)
Keyphrases
- logistic regression
- genome wide
- gene gene interactions
- decision trees
- high throughput
- chi square test
- field programmable gate array
- real time
- logistic regression models
- complex diseases
- loss function
- odds ratio
- naive bayes
- support vector
- data acquisition
- parallel computing
- breast cancer
- microarray
- human genome
- fold cross validation
- high speed
- machine learning
- graphics processing units
- transcription factors
- biological data
- genome wide association studies
- hardware implementation
- statistical analysis
- pairwise