A Space-Efficient Approach towards Distantly Homologous Protein Similarity Searches.
Akash NagSunil KarformaPublished in: CoRR (2015)
Keyphrases
- space efficient
- similarity search
- mass spectra
- sequence databases
- sequence alignment
- data structure
- distance function
- metric space
- similarity searching
- amino acids
- data streams
- high dimensional
- similarity measure
- data partitioning
- knn
- multimedia databases
- protein sequences
- protein structure
- r tree
- sliding window
- locality sensitive hashing
- efficient similarity search
- b tree
- high dimensional data
- indexing techniques
- suffix array
- linear space
- query processing
- hash functions
- sequence analysis
- indexing structure
- nearest neighbor search
- uncertain data streams
- similarity queries
- bloom filter
- similarity measurement
- database systems
- learning algorithm
- machine learning
- access methods
- data sources
- neural network
- data sets
- range sum queries
- database