Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
Scott L. CarterAron C. EklundBrigham H. MechamIsaac S. KohaneZoltan SzallasiPublished in: BMC Bioinform. (2005)
Keyphrases
- gene expression
- cross platform
- microarray
- cdna microarray
- gene selection
- gene expression profiles
- dna microarray
- microarray data
- gene expression data
- colon cancer
- gene expression data sets
- gene expression data analysis
- cancer diagnosis
- microarray technology
- open source
- cancer classification
- high throughput
- survival prediction
- biological processes
- microarray images
- tissue samples
- analysis of gene expression
- differential expression
- high dimensionality
- gene expression patterns
- biological networks
- microarray data analysis
- gene ontology
- business applications
- gene expression analysis
- software package
- experimental conditions
- binding sites
- meta analysis
- microarray datasets
- transcription factors
- clustering analysis
- noise reduction
- genomic data
- biological data
- image processing
- expression levels of thousands of genes