A Faster Algorithm for Simultaneous Alignment and Folding of RNA.
Michal Ziv-UkelsonIrit Gat-ViksYdo WexlerRon ShamirPublished in: J. Comput. Biol. (2010)
Keyphrases
- times faster
- search space
- matching algorithm
- cost function
- optimization algorithm
- dynamic programming
- high accuracy
- learning algorithm
- rna secondary structure prediction
- preprocessing
- experimental evaluation
- theoretical analysis
- worst case
- highly efficient
- improved algorithm
- computational cost
- np hard
- computational complexity
- linear programming
- detection algorithm
- k means
- objective function
- rna secondary structures
- genetic algorithm
- probabilistic model
- input data
- pairwise
- dynamic time warping
- similarity measure
- energy landscape