Ramethy: Reconfigurable Acceleration of Bisulfite Sequence Alignment.
James ArramWayne LukPeiyong JiangPublished in: FPGA (2015)
Keyphrases
- sequence alignment
- pairwise
- low cost
- reconfigurable architecture
- dynamic programming
- binding sites
- protein sequences
- multiple sequence alignment
- amino acids
- gpu accelerated
- phylogenetic analysis
- multiple alignment
- comparative genomics
- hardware implementation
- computational biology
- real time
- field programmable gate array
- protein structure prediction
- reinforcement learning