CUDA ClustalW: An efficient parallel algorithm for progressive multiple sequence alignment on Multi-GPUs.
Che-Lun HungYu-Shiang LinChun-Yuan LinYeh-Ching ChungYi-Fang ChungPublished in: Comput. Biol. Chem. (2015)
Keyphrases
- multiple sequence alignment
- parallel algorithm
- parallel programming
- memory efficient
- graphics processors
- cpu implementation
- parallel computation
- protein sequences
- shared memory
- biological sequences
- genetic algorithm
- secondary structure
- compute unified device architecture
- computational biology
- general purpose
- parallel processing
- parallel version
- gpu implementation
- multicore processors
- parallel architectures
- cluster of workstations
- phylogenetic trees
- sequence alignment
- graphics processing units
- molecular biology
- parallel computing
- parallel implementation
- constraint satisfaction
- real time