HMMer-Cell: High Performance Protein Profile Searching on the Cell/B.E. Processor.

Jizhu Lu Michael Perrone Kursad Albayraktaroglu Manoj Franklin

Published in: ISPASS (2008)

Keyphrases

cellular processes
distributed memory
protein sequences
computation intensive
cell lines
parallel processing

protein structure
amino acids
real time systems
protein folding
protein function
low cost

embedded dram
embedded processors
single chip
protein structure prediction
similarity searching
experimental conditions

random access memory
sequence alignment
secondary structure
user profiles
real time