HMMer-Cell: High Performance Protein Profile Searching on the Cell/B.E. Processor.
Jizhu LuMichael PerroneKursad AlbayraktarogluManoj FranklinPublished in: ISPASS (2008)
Keyphrases
- cellular processes
- distributed memory
- protein sequences
- computation intensive
- cell lines
- parallel processing
- protein structure
- amino acids
- real time systems
- protein folding
- protein function
- low cost
- embedded dram
- embedded processors
- single chip
- protein structure prediction
- similarity searching
- experimental conditions
- random access memory
- sequence alignment
- secondary structure
- user profiles
- real time