SPATA: A seeding and patching algorithm for de novo transcriptome assembly.
Zhiyu ZhaoTin Chi NguyenNan DengKristen Marie JohnsonDongxiao ZhuPublished in: BIBM Workshops (2011)
Keyphrases
- learning algorithm
- theoretical analysis
- worst case
- data sets
- detection algorithm
- computational complexity
- k means
- cost function
- high accuracy
- optimal solution
- particle swarm optimization
- objective function
- preprocessing
- computational cost
- convergence rate
- ant colony optimization
- segmentation algorithm
- expectation maximization
- search space
- np hard
- decision trees
- linear programming
- probabilistic model
- classification algorithm
- matching algorithm
- times faster
- dynamic programming
- improved algorithm