Fast Genome-Wide Third-order SNP Interaction Tests with Information Gain on a Low-cost Heterogeneous Parallel FPGA-GPU Computing Architecture.
Lars WienbrandtJan Christian KässensMatthias HübenthalDavid EllinghausPublished in: ICCS (2017)
Keyphrases
- genome wide
- information gain
- low cost
- real time
- high throughput
- feature selection
- decision trees
- parallel computing
- text categorization
- data acquisition
- human genome
- mutual information
- chi squared
- graphics processing units
- field programmable gate array
- hardware implementation
- naive bayes
- single nucleotide polymorphisms
- correlation coefficient
- high speed
- transcription factors
- average precision