Signal-Theoretical DNA Similarity Measure Revealing Unexpected Similarities of E. coli Promoters.
Igor V. DeynekoAlexander E. KelHelmut BlöckerGerhard KauerPublished in: Silico Biol. (2005)
Keyphrases
- similarity measure
- binding sites
- distance measure
- similarity values
- pairwise
- theoretical analysis
- mutual information
- signal processing
- dna sequences
- high frequency
- feature vectors
- frequency domain
- dna computing
- similarity search
- similarity metric
- non stationary
- similarity function
- similarity computation
- sequence data
- clustering method
- similarity measurement
- computational modeling
- cis regulatory
- similarity matrix
- semantic similarity
- biological sequences
- sequence analysis
- similarity scores
- similarity assessment
- euclidean distance
- co occurrence
- transcription factor binding sites
- feature extraction