ASMCap: An Approximate String Matching Accelerator for Genome Sequence Analysis Based on Capacitive Content Addressable Memory.
Hongtao ZhongZhonghao ChenWenqin HuangfuChen WangYixin XuTianyi WangYao YuYongpan LiuVijaykrishnan NarayananHuazhong YangXueqing LiPublished in: DAC (2023)
Keyphrases
- sequence analysis
- approximate string matching
- suffix array
- suffix tree
- data structure
- string matching
- sequence data
- space efficient
- sequence databases
- protein sequences
- data compression
- computational biology
- edit distance
- n gram
- similarity measurement
- pattern matching
- space requirements
- lempel ziv
- database systems
- index structure
- high speed
- compressed text