Protein Structure Searching using Suffix Arrays.
Tarek F. GharibAhmed SalahIbrahim M. El-HenawyAbdel-Badeeh M. SalemPublished in: BIOCOMP (2008)
Keyphrases
- protein structure
- suffix array
- string matching
- protein sequences
- data structure
- protein structure prediction
- suffix tree
- space efficient
- secondary structure
- protein structural
- protein structure alignment
- sequence analysis
- protein tertiary structure
- pattern matching
- inverted file
- amino acid sequences
- co occurrence
- experimentally determined
- contact map
- information retrieval
- data compression
- similarity measurement
- euclidean distance