Deciphering Cryptic Binding Sites on Proteins by Mixed-Solvent Molecular Dynamics.
S. Roy KimuraHai Peng HuAnatoly M. RuvinskyWoody ShermanAngelo D. FaviaPublished in: J. Chem. Inf. Model. (2017)
Keyphrases
- molecular dynamics
- binding sites
- dna binding
- protein folding
- protein protein
- protein interaction
- molecular dynamics simulations
- dna sequences
- transcription factors
- gene expression
- cis regulatory
- sequence data
- high performance computing
- protein families
- scientific data
- motif discovery
- statistical significance
- fluid flow
- protein function
- protein protein interactions
- coding regions
- protein sequences
- amino acids
- computational methods
- genome wide
- biological processes
- protein structure
- interaction networks
- transcription factor binding sites
- microarray
- database systems