DTA-SiST: de novo transcriptome assembly by using simplified suffix trees.
Jin ZhaoHaodi FengDaming ZhuChi ZhangYing XuPublished in: BMC Bioinform. (2019)
Keyphrases
- suffix tree
- rna seq
- data structure
- high throughput
- suffix array
- tree construction
- string matching
- space requirements
- pattern matching
- disk resident
- alternative splicing
- gene expression
- human genome
- index structure
- space efficient
- periodicity detection
- tandem mass spectra
- binding sites
- database
- computational biology
- biological data
- management system
- information retrieval