DNA Lossless Differential Compression Algorithm based on Similarity of Genomic Sequence Database
Heba AfifyMuhammad IslamManal Abdel WahedPublished in: CoRR (2011)
Keyphrases
- compression algorithm
- sequence databases
- sequence data
- image compression
- lossless data compression
- arithmetic coding
- jpeg ls
- compression ratio
- data compression
- similarity search
- biological sequences
- protein sequences
- compression scheme
- similarity measure
- genome sequences
- sequential patterns
- bitstream
- lossless compression
- sequential pattern mining
- biological data
- subband
- similarity measurement
- distance function
- wavelet transform
- genomic sequences
- quadtree decomposition
- approximate string matching
- lossy compression
- binding sites
- entropy coding
- high throughput
- coding scheme
- indexing methods
- coding method
- high dimensional
- database