MSA-CUDA: Multiple Sequence Alignment on Graphics Processing Units with CUDA.
Yongchao LiuBertil SchmidtDouglas L. MaskellPublished in: ASAP (2009)
Keyphrases
- multiple sequence alignment
- compute unified device architecture
- gpu implementation
- graphics processing units
- parallel implementation
- general purpose
- graphics hardware
- graphics processors
- parallel algorithm
- memory efficient
- parallel computation
- protein sequences
- shared memory
- parallel computing
- genetic algorithm
- cpu implementation
- real time
- computational biology
- parallel processing
- biological sequences
- phylogenetic trees
- sequence alignment
- secondary structure
- massively parallel
- computing systems
- high performance computing
- efficient implementation
- neural network