Parallel-ProBiS: Fast parallel algorithm for local structural comparison of protein structures and binding sites.
Janez KoncMatjaz DepolliRoman TrobecKati RozmanDusanka JanezicPublished in: J. Comput. Chem. (2012)
Keyphrases
- parallel algorithm
- protein structure
- binding sites
- protein protein
- parallel programming
- parallel computation
- shared memory
- cluster of workstations
- parallel version
- parallel implementations
- experimentally determined
- protein structural
- protein sequences
- sequence alignment
- protein families
- dna sequences
- transcription factors
- secondary structure
- gene expression
- molecular biology
- amino acid sequences
- amino acids
- motif discovery
- protein function
- protein protein interactions
- computational methods
- contact map
- sequence data
- transcription factor binding sites
- protein backbone
- data mining
- statistical analysis
- protein structure prediction
- microarray
- high throughput
- statistical significance
- parallel implementation