ASMCap: An Approximate String Matching Accelerator for Genome Sequence Analysis Based on Capacitive Content Addressable Memory.
Hongtao ZhongZhonghao ChenWenqin HuangfuChen WangYixin XuTianyi WangYao YuYongpan LiuVijaykrishnan NarayananHuazhong YangXueqing LiPublished in: CoRR (2023)
Keyphrases
- sequence analysis
- approximate string matching
- suffix array
- suffix tree
- sequence data
- string matching
- data structure
- space efficient
- sequence databases
- edit distance
- data compression
- computational biology
- similarity measurement
- lempel ziv
- pattern matching
- n gram
- inverted file
- machine learning
- protein sequences
- information retrieval systems
- high speed
- indexing techniques