Optimizing Burrows-Wheeler Transform-Based Sequence Alignment on Multicore Architectures.

Jing Zhang Heshan Lin Pavan Balaji Wu-chun Feng

Published in: CCGRID (2013)

Keyphrases

sequence alignment
pairwise
dynamic programming
memory management
protein sequences
amino acids
phylogenetic analysis
binding sites
multiple alignment
sequence databases
gpu accelerated
protein structure
shared memory
machine learning
multiple sequence alignment
comparative genomics
multicore processors