Identifying Interaction Sites in "Recalcitrant" Proteins: Predicted Protein and Rna Binding Sites in Rev Proteins of Hiv-1 and Eiav Agree with Experimental Data
Michael TerribiliniJae-Hyung LeeChanghui YanRobert L. JerniganSusan CarpenterVasant G. HonavarDrena DobbsPublished in: CoRR (2005)
Keyphrases
- experimental data
- dna binding
- binding sites
- protein interaction
- genome wide
- protein families
- protein protein
- cis regulatory
- protein function
- structural motifs
- protein protein interactions
- protein sequences
- amino acids
- gene expression
- protein structure
- predicting protein
- experimentally determined
- dna sequences
- high throughput
- transcription factors
- amino acid sequences
- computational methods
- motif discovery
- genome sequences
- protein complexes
- protein interaction networks
- secondary structure
- protein structure prediction
- interaction networks
- subcellular localization
- biological sequences
- functional modules
- gene ontology
- sequence alignment
- statistical significance
- protein folding
- biological processes
- biological data
- sequence data
- protein protein interaction networks
- model selection
- sample size
- biological systems
- coding regions
- biological networks
- alternative splicing
- transcription factor binding sites
- component analysis