High performance Intra-task parallelization of Multiple Sequence Alignments on CUDA-compatible GPUs.
Cheng LingKhaled BenkridAhmet T. ErdoganPublished in: AHS (2011)
Keyphrases
- multiple sequence alignments
- graphics processing units
- gpu implementation
- parallel processing
- parallel programming
- general purpose
- parallel computation
- distributed memory
- shared memory
- protein sequences
- coarse grained
- graphics hardware
- parallel implementation
- parallel computing
- graphics processors
- multi core systems
- pairwise
- multiple sequence alignment
- protein protein interactions
- phylogenetic trees
- parallel algorithm
- real time
- massively parallel
- high performance computing
- computational biology
- computing systems
- protein structure prediction
- scientific computing
- message passing
- secondary structure
- fine grained
- data analysis
- machine learning