ReneGENE-Novo: Co-designed Algorithm-Architecture for Accelerated Preprocessing and Assembly of Genomic Short Reads.
Santhi NatarajanN. Krishna KumarH. V. AnuchanDebnath PalS. K. NandyPublished in: ARC (2018)
Keyphrases
- preprocessing
- detection algorithm
- probabilistic model
- computational cost
- experimental evaluation
- computationally efficient
- particle swarm optimization
- np hard
- cost function
- recognition algorithm
- preprocessing phase
- linear programming
- times faster
- matching algorithm
- optimization algorithm
- preprocessing stage
- theoretical analysis
- feature extraction
- worst case
- search space
- computational complexity
- optimal solution
- expectation maximization
- high accuracy
- clustering method
- tree structure
- significant improvement