Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads.
Jan SchröderArthur L. HsuSamantha E. BoyleGeoff MacIntyreMarek CmeroRichard W. TothillRicky W. JohnstoneMark ShackletonAnthony T. PapenfussPublished in: Bioinform. (2014)
Keyphrases
- comparative genomics
- high throughput sequencing
- sequence data
- human genome
- regulatory elements
- genomic data
- genome wide
- sequence alignment
- cell lines
- genomic sequences
- high throughput
- gene clusters
- gene expression
- medical images
- dna sequences
- genome sequences
- evolutionary history
- rna seq
- escherichia coli
- image registration
- pairwise
- nucleotide sequences
- genome scale
- mass spectrometry
- comparative analysis
- biological data
- mr images