Anthony T. Papenfuss

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 9

Top Topics

Systematic Review

Computational Methods

Top Venues

Briefings Bioinform.

J. Open Source Softw.

Publications

Göknur Giner, Saima Ikram, Marco J. Herold, Anthony T. Papenfuss
A systematic review of computational methods for designing efficient guides for CRISPR DNA base editor systems. Briefings Bioinform. 24 (4) (2023)
Md. Abdullah-Al-Kamran Khan, Jian Wu, Yuhan Sun, Alexander D. Barrow, Anthony T. Papenfuss, Stefano Mangiola
cellsig plug-in enhances CIBERSORTx signature selection for multidataset transcriptomes with sparse multilevel modelling. Bioinform. 39 (12) (2023)
Daniel Cameron, Ruining Dong, Anthony T. Papenfuss
StructuralVariantAnnotation: a R/Bioconductor foundation for a caller-agnostic structural variant software ecosystem. Bioinform. 38 (7) (2022)
Stefano Mangiola, Maria A Doyle, Anthony T. Papenfuss
Interfacing Seurat with the R tidy universe. Bioinform. 37 (22) (2021)
Daniel Cameron, Nina Jacobs, Paul Roepman, Peter Priestley, Edwin Cuppen, Anthony T. Papenfuss
VIRUSBreakend: Viral Integration Recognition Using Single Breakends. Bioinform. 37 (19) (2021)
Stefano Mangiola, Anthony T. Papenfuss
tidyHeatmap: an R package for modular heatmap production based on tidy principles. J. Open Source Softw. 5 (52) (2020)
Jan Schröder, Adrianto Wirawan, Bertil Schmidt, Anthony T. Papenfuss
CLOVE: classification of genomic fusions into structural variation events. BMC Bioinform. 18 (1) (2017)
Kenneth D. Doig, Jason Ellul, Andrew Fellowes, Ella R. Thompson, Georgina L. Ryland, Piers Blombery, Anthony T. Papenfuss, Stephen B. Fox
Canary: an atomic pipeline for clinical amplicon assays. BMC Bioinform. 18 (1) (2017)
Jan Schröder, Vincent Corbin, Anthony T. Papenfuss
HYSYS: have you swapped your samples? Bioinform. 33 (4) (2017)
Jan Schröder, Arthur L. Hsu, Samantha E. Boyle, Geoff MacIntyre, Marek Cmero, Richard W. Tothill, Ricky W. Johnstone, Mark Shackleton, Anthony T. Papenfuss
Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads. Bioinform. 30 (8) (2014)