MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments.
Piero FariselliMichele FinelliDavide MarchignoliPier Luigi MartelliIvan RossiRita CasadioPublished in: Bioinform. (2003)
Keyphrases
- optimization algorithm
- case study
- experimental evaluation
- dynamic programming
- cost function
- learning algorithm
- optimization process
- improved algorithm
- computationally efficient
- preprocessing
- stochastic gradient
- recognition algorithm
- matching algorithm
- detection algorithm
- computational cost
- computational complexity
- data sets
- evolutionary algorithm
- search space
- linear programming
- optimal solution
- real world
- decision trees
- objective function
- optimization criteria
- evolution strategy
- constrained optimization
- similarity measure
- times faster
- significant improvement
- search algorithm
- simulated annealing
- k means