Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature.
Guocai ChenJieyi ZhaoTrevor CohenCui TaoJingchun SunHua XuElmer V. BernstamAndrew LawsonJia ZengAmber M. JohnsonVijaykumar HollaAnn M. BaileyHumberto Lara-GuerraBeate LitzenburgerFunda Meric-BernstamW. Jim ZhengPublished in: Database J. Biol. Databases Curation (2015)
Keyphrases
- biomedical literature
- semantic relationships
- text mining
- biomedical ontologies
- co occurrence
- domain ontology
- biological entities
- semantic information
- semantic similarity
- wordnet
- biological processes
- semantic relations
- keywords
- protein protein interaction networks
- automatic extraction
- data sources
- protein protein interactions
- named entities
- word sense disambiguation
- medical literature
- gene function
- semantic web
- ontological concepts
- data mining
- domain specific
- domain knowledge
- information retrieval
- machine learning
- ad hoc networks
- query interface
- semi automatic
- microarray
- protein interaction
- information extraction
- knowledge representation
- data analysis
- databases
- gene ontology terms