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Parallelizing the Smith-Waterman Algorithm Using OpenSHMEM and MPI-3 One-Sided Interfaces.

Matthew B. BakerAaron WelchManjunath Gorentla Venkata
Published in: OpenSHMEM (2015)
Keyphrases
  • parallel implementation
  • objective function
  • k means
  • database
  • similarity measure
  • np hard
  • dynamic programming
  • optimal solution
  • window size