Protein annotation as term categorization in the gene ontology using word proximity networks.
Karin VerspoorJudith D. CohnCliff A. JoslynSusan M. MniszewskiAndreas RechtsteinerLuis Mateus RochaTiago SimasPublished in: BMC Bioinform. (2005)
Keyphrases
- gene ontology
- gene products
- interaction networks
- protein function
- protein protein interactions
- signaling pathways
- biological networks
- gene function
- protein interaction
- microarray
- protein interaction data
- gene expression
- protein interaction networks
- gene networks
- semantic similarity
- ppi networks
- high throughput
- systems biology
- network analysis
- protein protein interaction networks
- protein function prediction
- protein complexes
- computational methods
- saccharomyces cerevisiae
- functional modules
- information theoretic
- co occurrence
- microarray expression data
- regulatory networks
- biological data
- text categorization
- complex networks
- metadata
- controlled vocabulary
- gene expression data
- mass spectrometry
- gene regulatory networks
- gene expression analysis
- gene sets
- network structure
- protein structure
- biological processes
- biological knowledge
- complex systems
- amino acids
- knowledge discovery
- keywords
- knowledge base
- social networks